GABrowseΒΆ

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Try it now: https://gabrowse.appspot.com/

GABrowse is a sample application designed to demonstrate the capabilities of the Global Alliance for Genomics and Health API GA4GH v0.5.1. Currently, you can view data from Google and Ensembl.

  • Use the button on the left to select a Read group set or Call set.
  • Once loaded, choose a chromosome and zoom or drag the main graph to explore Read data.
  • Individual bases will appear once you zoom in far enough.

To make use of this upon your own data:

  1. First, load your data into Google Genomics. See Load Data into Google Genomics for more detail as to how to do this.
  2. Navigate to the auth-enabled endpoint http://gabrowse-with-auth.appspot.com/ and go through the oauth flow.
  3. View some data, for example http://gabrowse-with-auth.appspot.com/#=&readsetId=CMvnhpKTFhCJyLrAurGOnrAB&backend=GOOGLE&callsetId=10473108253681171589-538&cBackend=GOOGLE&location=5%3A90839366
  4. Then modify the ReadGroupSetId and/or CallsetId in the URL to those of your data.

The code for this sample application is on GitHub https://github.com/googlegenomics/api-client-python

Have feedback or corrections? All improvements to these docs are welcome! You can click on the “Edit on GitHub” link at the top right corner of this page or file an issue.

Need more help? Please see https://cloud.google.com/genomics/support.